Detailed information of SNP:
|
SNP ID:
sf1211770669(Gbrowse)
Chromosome: chr12 Position: 11770669 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 75.57% | 24.43% |
| All Indica | 792 | 81.82% | 18.18% |
| All Japonica | 484 | 76.24% | 23.76% |
| Aus | 65 | 6.15% | 93.85% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 207 | 49.76% | 50.24% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 331 | 89.12% | 10.88% |
| Tropical Japonica | 85 | 28.24% | 71.76% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211770669 | T->C | INTERGENIC | None |