Detailed information of SNP:
|
SNP ID:
sf1211772412(Gbrowse)
Chromosome: chr12 Position: 11772412 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 83.59% | 16.41% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 490 | 78.57% | 21.43% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 331 | 90.63% | 9.37% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211772412 | T->C | INTERGENIC | None |