Detailed information of SNP:
|
SNP ID:
sf1211778641(Gbrowse)
Chromosome: chr12 Position: 11778641 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 97.48% | 2.52% |
| All Indica | 766 | 95.95% | 4.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 39 | 100.00% | 0.00% |
| Indica I | 353 | 96.03% | 3.97% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 203 | 96.55% | 3.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211778641 | C->T | LOC_Os12g20200(LOC_Os12g20200.1) | Synonymous |