Detailed information of SNP:
|
SNP ID:
sf1211799556(Gbrowse)
Chromosome: chr12 Position: 11799556 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1169 | 73.65% | 26.35% |
| All Indica | 760 | 98.16% | 1.84% |
| All Japonica | 363 | 21.21% | 78.79% |
| Aus | 11 | 90.91% | 9.09% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 183 | 97.81% | 2.19% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 287 | 6.97% | 93.03% |
| Tropical Japonica | 29 | 96.55% | 3.45% |
| Japonica Intermediate | 47 | 61.70% | 38.30% |
| Group VI/Aromatic | 2 | 0.00% | 100.00% |
| Intermediate | 33 | 84.85% | 15.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211799556 | A->C | LOC_Os12g20240(LOC_Os12g20240.1) | Synonymous |