Detailed information of SNP:
|
SNP ID:
sf1211819822(Gbrowse)
Chromosome: chr12 Position: 11819822 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 51.50% | 48.50% |
| All Indica | 777 | 52.38% | 47.62% |
| All Japonica | 497 | 40.85% | 59.15% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 57.37% | 42.63% |
| Indica II | 203 | 52.71% | 47.29% |
| Indica Intermediate | 201 | 42.79% | 57.21% |
| Temperate Japonica | 335 | 18.21% | 81.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211819822 | A->G | LOC_Os12g20260(LOC_Os12g20260.1) | INTRON |