Detailed information of SNP:
|
SNP ID:
sf1211894266(Gbrowse)
Chromosome: chr12 Position: 11894266 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 62.56% | 37.44% |
| All Indica | 798 | 71.93% | 28.07% |
| All Japonica | 493 | 40.37% | 59.63% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 334 | 20.36% | 79.64% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211894266 | A->G | INTERGENIC | None |