Detailed information of SNP:
|
SNP ID:
sf1211896965(Gbrowse)
Chromosome: chr12 Position: 11896965 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.59% | 12.41% |
| All Indica | 798 | 81.58% | 18.42% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 58.02% | 41.98% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211896965 | A->G | INTERGENIC | None |