Detailed information of SNP:
|
SNP ID:
sf1211902459(Gbrowse)
Chromosome: chr12 Position: 11902459 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 80.09% | 19.91% |
| All Indica | 694 | 77.95% | 22.05% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 300 | 69.67% | 30.33% |
| Indica II | 204 | 89.22% | 10.78% |
| Indica Intermediate | 190 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211902459 | G->A | LOC_Os12g20390(LOC_Os12g20390.5) | INTRON |
| sf1211902459 | G->A | LOC_Os12g20390(LOC_Os12g20390.4) | UTR_3_PRIME |
| sf1211902459 | G->A | LOC_Os12g20390(LOC_Os12g20390.3) | UTR_3_PRIME |
| sf1211902459 | G->A | LOC_Os12g20390(LOC_Os12g20390.1) | UTR_3_PRIME |