Detailed information of SNP:
|
SNP ID:
sf1211942635(Gbrowse)
Chromosome: chr12 Position: 11942635 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.25% | 9.75% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211942635 | C->A | LOC_Os12g20460(LOC_Os12g20460.1) | INTRON |