Detailed information of SNP:
|
SNP ID:
sf1211955520(Gbrowse)
Chromosome: chr12 Position: 11955520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 86.69% | 13.31% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 491 | 72.30% | 27.70% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 85.80% | 14.20% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211955520 | G->A | INTERGENIC | None |