Detailed information of SNP:
|
SNP ID:
sf1211967280(Gbrowse)
Chromosome: chr12 Position: 11967280 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1194 | 57.96% | 42.04% |
| All Indica | 616 | 37.66% | 62.34% |
| All Japonica | 469 | 89.34% | 10.66% |
| Aus | 60 | 21.67% | 78.33% |
| Indica I | 300 | 23.67% | 76.33% |
| Indica II | 150 | 57.33% | 42.67% |
| Indica Intermediate | 166 | 45.18% | 54.82% |
| Temperate Japonica | 326 | 95.71% | 4.29% |
| Tropical Japonica | 78 | 75.64% | 24.36% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211967280 | A->T | INTERGENIC | None |