Detailed information of SNP:
|
SNP ID:
sf1211967646(Gbrowse)
Chromosome: chr12 Position: 11967646 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1297 | 93.06% | 6.94% |
| All Indica | 737 | 95.52% | 4.48% |
| All Japonica | 442 | 90.72% | 9.28% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 353 | 97.45% | 2.55% |
| Indica II | 189 | 91.53% | 8.47% |
| Indica Intermediate | 195 | 95.90% | 4.10% |
| Temperate Japonica | 309 | 96.12% | 3.88% |
| Tropical Japonica | 69 | 66.67% | 33.33% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1211967646 | T->C | INTERGENIC | None |