Detailed information of SNP:
|
SNP ID:
sf1212012763(Gbrowse)
Chromosome: chr12 Position: 12012763 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 82.99% | 17.01% |
| All Indica | 796 | 87.56% | 12.44% |
| All Japonica | 493 | 86.82% | 13.18% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212012763 | G->C | INTERGENIC | None |