Detailed information of SNP:
|
SNP ID:
sf1212021389(Gbrowse)
Chromosome: chr12 Position: 12021389 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 95.70% | 4.30% |
| All Indica | 790 | 97.72% | 2.28% |
| All Japonica | 465 | 92.47% | 7.53% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 329 | 95.44% | 4.56% |
| Tropical Japonica | 77 | 80.52% | 19.48% |
| Japonica Intermediate | 59 | 91.53% | 8.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212021389 | C->G | INTERGENIC | None |