Detailed information of SNP:
|
SNP ID:
sf1212021395(Gbrowse)
Chromosome: chr12 Position: 12021395 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 97.75% | 2.25% |
| All Indica | 793 | 99.24% | 0.76% |
| All Japonica | 468 | 95.73% | 4.27% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 328 | 97.87% | 2.13% |
| Tropical Japonica | 78 | 84.62% | 15.38% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212021395 | T->C | INTERGENIC | None |