Detailed information of SNP:
|
SNP ID:
sf1212034292(Gbrowse)
Chromosome: chr12 Position: 12034292 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 87.98% | 12.02% |
| All Indica | 752 | 86.84% | 13.16% |
| All Japonica | 486 | 97.33% | 2.67% |
| Aus | 56 | 39.29% | 60.71% |
| Indica I | 354 | 89.83% | 10.17% |
| Indica II | 201 | 87.06% | 12.94% |
| Indica Intermediate | 197 | 81.22% | 18.78% |
| Temperate Japonica | 326 | 97.55% | 2.45% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212034292 | C->T | INTERGENIC | None |