Detailed information of SNP:
|
SNP ID:
sf1212115735(Gbrowse)
Chromosome: chr12 Position: 12115735 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.33% | 14.67% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 69.62% | 30.38% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212115735 | G->A | LOC_Os12g21560(LOC_Os12g21560.1) | Non-Synonymous SNP |