Detailed information of SNP:
|
SNP ID:
sf1212127120(Gbrowse)
Chromosome: chr12 Position: 12127120 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.55% | 14.45% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 69.82% | 30.18% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212127120 | C->T | LOC_Os12g21580(LOC_Os12g21580.1) | Synonymous |