Detailed information of SNP:
|
SNP ID:
sf1212169740(Gbrowse)
Chromosome: chr12 Position: 12169740 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 93.30% | 6.70% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212169740 | C->T | INTERGENIC | None |