Detailed information of SNP:
|
SNP ID:
sf1212186796(Gbrowse)
Chromosome: chr12 Position: 12186796 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 96.73% | 3.27% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 484 | 91.12% | 8.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 84 | 53.57% | 46.43% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212186796 | G->A | LOC_Os12g21690(LOC_Os12g21690.1) | Non-Synonymous SNP |