Detailed information of SNP:
|
SNP ID:
sf1212209053(Gbrowse)
Chromosome: chr12 Position: 12209053 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 89.09% | 10.91% |
| All Indica | 797 | 96.49% | 3.51% |
| All Japonica | 484 | 76.86% | 23.14% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 86.23% | 13.77% |
| Tropical Japonica | 85 | 40.00% | 60.00% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212209053 | C->T | INTERGENIC | None |