Detailed information of SNP:
|
SNP ID:
sf1212211722(Gbrowse)
Chromosome: chr12 Position: 12211722 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 91.17% | 8.83% |
| All Indica | 794 | 96.73% | 3.27% |
| All Japonica | 457 | 81.62% | 18.38% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 87.38% | 12.62% |
| Tropical Japonica | 71 | 56.34% | 43.66% |
| Japonica Intermediate | 61 | 80.33% | 19.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212211722 | C->T | LOC_Os12g21720(LOC_Os12g21720.1) | Synonymous |