Detailed information of SNP:
|
SNP ID:
sf1212214837(Gbrowse)
Chromosome: chr12 Position: 12214837 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1272 | 65.80% | 34.20% |
| All Indica | 756 | 86.90% | 13.10% |
| All Japonica | 404 | 20.30% | 79.70% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 356 | 89.89% | 10.11% |
| Indica II | 195 | 82.05% | 17.95% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 305 | 7.54% | 92.46% |
| Tropical Japonica | 45 | 71.11% | 28.89% |
| Japonica Intermediate | 54 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212214837 | A->G | LOC_Os12g21730(LOC_Os12g21730.1) | Synonymous |