Detailed information of SNP:
|
SNP ID:
sf1212232869(Gbrowse)
Chromosome: chr12 Position: 12232869 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 65.76% | 34.24% |
| All Indica | 779 | 76.77% | 23.23% |
| All Japonica | 494 | 41.70% | 58.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 87.98% | 12.02% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 201 | 79.60% | 20.40% |
| Temperate Japonica | 334 | 20.36% | 79.64% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212232869 | T->G | INTERGENIC | None |