Detailed information of SNP:
|
SNP ID:
sf1212282942(Gbrowse)
Chromosome: chr12 Position: 12282942 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.64% | 31.36% |
| All Indica | 796 | 82.41% | 17.59% |
| All Japonica | 497 | 40.64% | 59.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212282942 | A->G | LOC_Os12g21820(LOC_Os12g21820.1) | INTRON |