Detailed information of SNP:
|
SNP ID:
sf1212331986(Gbrowse)
Chromosome: chr12 Position: 12331986 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 97.38% | 2.62% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 493 | 92.90% | 7.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212331986 | C->T | LOC_Os12g21900(LOC_Os12g21900.1) | Non-Synonymous SNP |