Detailed information of SNP:
|
SNP ID:
sf1212384183(Gbrowse)
Chromosome: chr12 Position: 12384183 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1279 | 79.75% | 20.25% |
| All Indica | 685 | 82.63% | 17.37% |
| All Japonica | 476 | 73.32% | 26.68% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 314 | 81.85% | 18.15% |
| Indica II | 181 | 82.87% | 17.13% |
| Indica Intermediate | 190 | 83.68% | 16.32% |
| Temperate Japonica | 322 | 84.47% | 15.53% |
| Tropical Japonica | 87 | 35.63% | 64.37% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212384183 | G->A | LOC_Os12g22020(LOC_Os12g22020.1) | Non-Synonymous SNP |