Detailed information of SNP:
|
SNP ID:
sf1212501777(Gbrowse)
Chromosome: chr12 Position: 12501777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 98.18% | 1.82% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 461 | 95.01% | 4.99% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 73.17% | 26.83% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212501777 | G->A | INTERGENIC | None |