Detailed information of SNP:
|
SNP ID:
sf1212526968(Gbrowse)
Chromosome: chr12 Position: 12526968 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.87% | 38.13% |
| All Indica | 799 | 55.19% | 44.81% |
| All Japonica | 497 | 68.81% | 31.19% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 58.67% | 41.33% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 80.60% | 19.40% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212526968 | C->T | LOC_Os12g22230(LOC_Os12g22230.1) | Synonymous |