Detailed information of SNP:
|
SNP ID:
sf1212535409(Gbrowse)
Chromosome: chr12 Position: 12535409 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1304 | 61.81% | 38.19% |
| All Indica | 767 | 87.61% | 12.39% |
| All Japonica | 428 | 10.51% | 89.49% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 366 | 87.98% | 12.02% |
| Indica II | 198 | 89.90% | 10.10% |
| Indica Intermediate | 203 | 84.73% | 15.27% |
| Temperate Japonica | 311 | 5.47% | 94.53% |
| Tropical Japonica | 62 | 17.74% | 82.26% |
| Japonica Intermediate | 55 | 30.91% | 69.09% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 35 | 68.57% | 31.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212535409 | C->T | LOC_Os12g22250(LOC_Os12g22250.1) | Synonymous |