Detailed information of SNP:
|
SNP ID:
sf1212564623(Gbrowse)
Chromosome: chr12 Position: 12564623 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1161 | 58.91% | 41.09% |
| All Indica | 688 | 78.78% | 21.22% |
| All Japonica | 374 | 18.18% | 81.82% |
| Aus | 55 | 80.00% | 20.00% |
| Indica I | 331 | 80.97% | 19.03% |
| Indica II | 173 | 81.50% | 18.50% |
| Indica Intermediate | 184 | 72.28% | 27.72% |
| Temperate Japonica | 300 | 10.67% | 89.33% |
| Tropical Japonica | 36 | 72.22% | 27.78% |
| Japonica Intermediate | 38 | 26.32% | 73.68% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 32 | 59.38% | 40.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212564623 | G->A | INTERGENIC | None |