Detailed information of SNP:
|
SNP ID:
sf1212593953(Gbrowse)
Chromosome: chr12 Position: 12593953 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 98.17% | 1.83% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 444 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 91.61% | 8.39% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212593953 | C->T | LOC_Os12g22310(LOC_Os12g22310.1) | Non-Synonymous SNP |