Detailed information of SNP:
|
SNP ID:
sf1212595114(Gbrowse)
Chromosome: chr12 Position: 12595114 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 64.28% | 35.72% |
| All Indica | 767 | 55.67% | 44.33% |
| All Japonica | 472 | 82.63% | 17.37% |
| Aus | 54 | 33.33% | 66.67% |
| Indica I | 361 | 45.15% | 54.85% |
| Indica II | 203 | 74.88% | 25.12% |
| Indica Intermediate | 203 | 55.17% | 44.83% |
| Temperate Japonica | 330 | 96.67% | 3.33% |
| Tropical Japonica | 76 | 40.79% | 59.21% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212595114 | G->C | LOC_Os12g22310(LOC_Os12g22310.1) | INTRON |