Detailed information of SNP:
|
SNP ID:
sf1212595957(Gbrowse)
Chromosome: chr12 Position: 12595957 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1263 | 90.50% | 9.50% |
| All Indica | 673 | 88.56% | 11.44% |
| All Japonica | 472 | 93.86% | 6.14% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 277 | 87.73% | 12.27% |
| Indica II | 203 | 94.58% | 5.42% |
| Indica Intermediate | 193 | 83.42% | 16.58% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 83 | 90.36% | 9.64% |
| Japonica Intermediate | 57 | 82.46% | 17.54% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212595957 | C->T | LOC_Os12g22310(LOC_Os12g22310.1) | Non-Synonymous SNP |