Detailed information of SNP:
|
SNP ID:
sf1212613315(Gbrowse)
Chromosome: chr12 Position: 12613315 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 95.50% | 4.50% |
| All Indica | 756 | 93.78% | 6.22% |
| All Japonica | 481 | 97.92% | 2.08% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 357 | 95.24% | 4.76% |
| Indica II | 198 | 94.95% | 5.05% |
| Indica Intermediate | 201 | 90.05% | 9.95% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212613315 | C->T | INTERGENIC | None |