Detailed information of SNP:
|
SNP ID:
sf1212614541(Gbrowse)
Chromosome: chr12 Position: 12614541 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 66.10% | 33.90% |
| All Indica | 794 | 77.08% | 22.92% |
| All Japonica | 496 | 42.54% | 57.46% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 88.71% | 11.29% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212614541 | G->A | LOC_Os12g22350(LOC_Os12g22350.1) | Non-Synonymous SNP |