Detailed information of SNP:
|
SNP ID:
sf1212664116(Gbrowse)
Chromosome: chr12 Position: 12664116 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1337 | 57.59% | 42.41% |
| All Indica | 734 | 86.10% | 13.90% |
| All Japonica | 489 | 18.20% | 81.80% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 347 | 91.93% | 8.07% |
| Indica II | 196 | 81.63% | 18.37% |
| Indica Intermediate | 191 | 80.10% | 19.90% |
| Temperate Japonica | 333 | 7.21% | 92.79% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 64 | 37.50% | 62.50% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212664116 | C->T | INTERGENIC | None |