Detailed information of SNP:
|
SNP ID:
sf1212718695(Gbrowse)
Chromosome: chr12 Position: 12718695 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1257 | 68.81% | 31.19% |
| All Indica | 770 | 57.66% | 42.34% |
| All Japonica | 412 | 87.62% | 12.38% |
| Aus | 37 | 86.49% | 13.51% |
| Indica I | 371 | 58.49% | 41.51% |
| Indica II | 196 | 61.73% | 38.27% |
| Indica Intermediate | 203 | 52.22% | 47.78% |
| Temperate Japonica | 304 | 91.12% | 8.88% |
| Tropical Japonica | 53 | 66.04% | 33.96% |
| Japonica Intermediate | 55 | 89.09% | 10.91% |
| Group VI/Aromatic | 4 | 25.00% | 75.00% |
| Intermediate | 34 | 79.41% | 20.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212718695 | C->T | INTERGENIC | None |