Detailed information of SNP:
|
SNP ID:
sf1212723761(Gbrowse)
Chromosome: chr12 Position: 12723761 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 64.30% | 35.70% |
| All Indica | 788 | 94.42% | 5.58% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212723761 | T->C | INTERGENIC | None |