Detailed information of SNP:
|
SNP ID:
sf1212797131(Gbrowse)
Chromosome: chr12 Position: 12797131 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 86.83% | 13.17% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 490 | 71.63% | 28.37% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 84.89% | 15.11% |
| Tropical Japonica | 91 | 25.27% | 74.73% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212797131 | G->A | LOC_Os12g22660(LOC_Os12g22660.1) | Synonymous |