Detailed information of SNP:
|
SNP ID:
sf1212812803(Gbrowse)
Chromosome: chr12 Position: 12812803 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 92.59% | 7.41% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212812803 | G->A | LOC_Os12g22700(LOC_Os12g22700.1) | Synonymous |