Detailed information of SNP:
|
SNP ID:
sf1212819636(Gbrowse)
Chromosome: chr12 Position: 12819636 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 64.55% | 35.45% |
| All Indica | 796 | 81.66% | 18.34% |
| All Japonica | 484 | 32.02% | 67.98% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 327 | 14.37% | 85.63% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212819636 | T->A | INTERGENIC | None |