Detailed information of SNP:
|
SNP ID:
sf1212870953(Gbrowse)
Chromosome: chr12 Position: 12870953 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 61.71% | 38.29% |
| All Indica | 761 | 91.85% | 8.15% |
| All Japonica | 467 | 15.85% | 84.15% |
| Aus | 63 | 53.97% | 46.03% |
| Indica I | 364 | 96.43% | 3.57% |
| Indica II | 201 | 84.08% | 15.92% |
| Indica Intermediate | 196 | 91.33% | 8.67% |
| Temperate Japonica | 330 | 3.94% | 96.06% |
| Tropical Japonica | 76 | 57.89% | 42.11% |
| Japonica Intermediate | 61 | 27.87% | 72.13% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212870953 | C->T | LOC_Os12g22810(LOC_Os12g22810.2) | INTRON |