Detailed information of SNP:
|
SNP ID:
sf1212871336(Gbrowse)
Chromosome: chr12 Position: 12871336 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 55.60% | 44.40% |
| All Indica | 770 | 84.94% | 15.06% |
| All Japonica | 481 | 12.89% | 87.11% |
| Aus | 62 | 41.94% | 58.06% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 203 | 73.40% | 26.60% |
| Indica Intermediate | 200 | 83.50% | 16.50% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 81 | 46.91% | 53.09% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212871336 | G->C | LOC_Os12g22810(LOC_Os12g22810.2) | Non-Synonymous SNP |