Detailed information of SNP:
|
SNP ID:
sf1212873899(Gbrowse)
Chromosome: chr12 Position: 12873899 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 55.33% | 44.67% |
| All Indica | 774 | 83.46% | 16.54% |
| All Japonica | 468 | 12.82% | 87.18% |
| Aus | 65 | 40.00% | 60.00% |
| Indica I | 364 | 91.48% | 8.52% |
| Indica II | 205 | 71.71% | 28.29% |
| Indica Intermediate | 205 | 80.98% | 19.02% |
| Temperate Japonica | 325 | 3.08% | 96.92% |
| Tropical Japonica | 78 | 46.15% | 53.85% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212873899 | G->A | LOC_Os12g22810(LOC_Os12g22810.2) | INTRON |