Detailed information of SNP:
|
SNP ID:
sf1212874288(Gbrowse)
Chromosome: chr12 Position: 12874288 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 90.94% | 9.06% |
| All Indica | 783 | 93.74% | 6.26% |
| All Japonica | 479 | 86.43% | 13.57% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 368 | 96.47% | 3.53% |
| Indica II | 207 | 87.92% | 12.08% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 321 | 93.15% | 6.85% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212874288 | T->C | LOC_Os12g22810(LOC_Os12g22810.2) | UTR_3_PRIME |