Detailed information of SNP:
|
SNP ID:
sf1212874656(Gbrowse)
Chromosome: chr12 Position: 12874656 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 57.15% | 42.85% |
| All Indica | 761 | 86.33% | 13.67% |
| All Japonica | 485 | 15.88% | 84.12% |
| Aus | 57 | 35.09% | 64.91% |
| Indica I | 353 | 92.92% | 7.08% |
| Indica II | 204 | 77.94% | 22.06% |
| Indica Intermediate | 204 | 83.33% | 16.67% |
| Temperate Japonica | 330 | 4.85% | 95.15% |
| Tropical Japonica | 89 | 49.44% | 50.56% |
| Japonica Intermediate | 66 | 25.76% | 74.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212874656 | G->A | INTERGENIC | None |