Detailed information of SNP:
|
SNP ID:
sf1212885793(Gbrowse)
Chromosome: chr12 Position: 12885793 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.05% | 24.95% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 42.45% | 57.55% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212885793 | T->A | LOC_Os12g22830(LOC_Os12g22830.1) | Non-Synonymous SNP |