Detailed information of SNP:
|
SNP ID:
sf1212946796(Gbrowse)
Chromosome: chr12 Position: 12946796 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1306 | 57.27% | 42.73% |
| All Indica | 700 | 68.29% | 31.71% |
| All Japonica | 489 | 34.56% | 65.44% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 328 | 86.28% | 13.72% |
| Indica II | 195 | 43.08% | 56.92% |
| Indica Intermediate | 177 | 62.71% | 37.29% |
| Temperate Japonica | 329 | 14.29% | 85.71% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212946796 | C->T | INTERGENIC | None |