Detailed information of SNP:
|
SNP ID:
sf1212947002(Gbrowse)
Chromosome: chr12 Position: 12947002 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 97.27% | 2.73% |
| All Indica | 704 | 95.03% | 4.97% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 95.24% | 4.76% |
| Indica II | 193 | 97.41% | 2.59% |
| Indica Intermediate | 175 | 92.00% | 8.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1212947002 | T->A | INTERGENIC | None |